Nextflow Modules
Showing module(s) with keyword "umitools"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bam_dedup_umi | Workflow | deduplication UMI BAM genome transcriptome umicollapse umitools | BAM deduplication with UMI processing for both genome and transcriptome alignments |
| nf-core/umitools/dedup | Process | umitools deduplication dedup | Deduplicate reads based on the mapping co-ordinate and the UMI attached to the read. |
| nf-core/umitools/extract | Process | UMI barcode extract umitools | Extracts UMI barcode from a read and add it to the read name, leaving any sample barcode in place |
| nf-core/umitools/group | Process | umitools umi deduplication dedup clustering | Group reads based on their UMI and mapping coordinates |
| nf-core/umitools/prepareforrsem | Process | umitools rsem salmon dedup | Make the output from umi_tools dedup or group compatible with RSEM |