Nextflow Modules
Showing module(s) with keyword "salmon"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/quantify_pseudo_alignment | Workflow | rnaseq quantification kallisto salmon | Perform quantification with Salmon or Kallisto to produce count tables and SummarizedExperiment objects |
| nf-core/quant_tximport_summarizedexperiment | Workflow | rnaseq quantification tximport summarizedexperiment salmon kallisto rsem | Post-process transcript-level quantification results using tximport to produce count matrices and SummarizedExperiment objects |
| nf-core/tximeta/tximport | Process | gene kallisto pseudoalignment rsem salmon transcript | Import transcript-level abundances and estimated counts for gene-level analysis packages |
| nf-core/umitools/prepareforrsem | Process | umitools rsem salmon dedup | Make the output from umi_tools dedup or group compatible with RSEM |