nf-core/xengsort/index @ 0.0.0-3fc6d40
Summary
Fast lightweight accurate xenograft sorting
Get started
Add the following snippet to your workflow script to include this module.
include { XENGSORT_INDEX } from 'nf-core/xengsort/index'
License
MIT License
Process
Name
|
XENGSORT_INDEX |
|---|
Input
5 channels
host_fasta
file
|
Reference genome fasta file from host, compressed or uncompressed. |
|---|
graft_fasta
file
|
Reference genome fasta file from graft, compressed or uncompressed. |
|---|
index
string
|
File name prefix to store index files. |
|---|
nobjects
string
|
Number of k-mers that will be stored in the hash table. Underscore should be used, i.e for 1000000, it should be typed 1_000_000. |
|---|
mask
string
|
Gapped k-mer mask (quoted string like '###_###'). |
|---|
Output
3 channels
#1
hash
${index}.hash
file
|
File with index hash file. *hash
|
|---|
#2
info
${index}.info
file
|
File with index info file. *info
|
|---|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| xengsort | A fast xenograft read sorter based on space-efficient k-mer hashing | https://gitlab.com/genomeinformatics/xengsort |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:37:00 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fxengsort%2Findex/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/xengsort/index/blobs/sha256:52edb6f7bfd63d366ec891bffa6f5d0502729d4f35f24db25a6360a6d0610300 |
| Size | 2.3 KB |
| Checksum | sha256:52edb6f7bfd63d366ec891bffa6f5d0502729d4f35f24db25a6360a6d0610300 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:53:15 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:37:00 (UTC) | 4 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:48:06 (UTC) | 4 | 2.2 KB |