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nf-core/argnorm
|
Process
|
amr
antimicrobial resistance
arg
antimicrobial resistance genes
genomics
metagenomics
normalization
drug categorization
|
Normalize antibiotic resistance genes (ARGs) using the ARO ontology (developed by CARD).
|
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nf-core/deeparg/downloaddata
|
Process
|
download
database
deeparg
antimicrobial resistance genes
deep learning
prediction
|
A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes
|
|
nf-core/deeparg/predict
|
Process
|
deeparg
antimicrobial resistance
antimicrobial resistance genes
arg
deep learning
prediction
contigs
metagenomes
|
A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes
|
|
nf-core/hamronization/amrfinderplus
|
Process
|
amr
antimicrobial resistance
arg
antimicrobial resistance genes
reporting
amrfinderplus
|
Tool to convert and summarize AMRfinderPlus outputs using the hAMRonization specification.
|
|
nf-core/hamronization/fargene
|
Process
|
amr
antimicrobial resistance
arg
antimicrobial resistance genes
reporting
fARGene
|
Tool to convert and summarize fARGene outputs using the hAMRonization specification
|
|
nf-core/hamronization/rgi
|
Process
|
amr
antimicrobial resistance
arg
antimicrobial resistance genes
reporting
rgi
|
Tool to convert and summarize RGI outputs using the hAMRonization specification.
|