Nextflow Modules
Showing module(s) with keyword "collect"
| Module | Keywords | Description |
|---|---|---|
| nf-core/custom/collectfeaturecounts | featurecounts collect counts tpm | Collects one or more subread/featureCounts raw output files (typically one per sample, for the same feature type/ORF caller) into a single long-format table with per-sample TPM (Transcripts Per Million) computed. |
| nf-core/custom/collectstats | stats collect summary qc | Collects per-sample read-processing statistics (trimming, decontamination, alignment, feature counting, and optionally taxonomy/function summaries) from a set of heterogeneous log/table files into a single overall-stats table per run. |