Nextflow Modules
Showing module(s) with keyword "feature"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/agat/spextractsequences | Process | genomics gff extract fasta sequence feature | This script extracts sequences in fasta format according to features described in a gff file. |
| nf-core/agat/spfilterfeaturefromkilllist | Process | genomics gff remove feature | The script aims to remove features based on a kill list. The default behaviour is to look at the features's ID. If the feature has an ID (case insensitive) listed among the kill list it will be removed. /!\ Removing a level1 or level2 feature will automatically remove all linked subfeatures, and removing all children of a feature will automatically remove this feature too. |
| nf-core/dshbio/filterbed | Process | bed filter feature | Filter features in gzipped BED format |
| nf-core/dshbio/filtergff3 | Process | gff3 filter feature | Filter features in gzipped GFF3 format |
| nf-core/dshbio/splitbed | Process | bed split feature | Split features in gzipped BED format |
| nf-core/dshbio/splitgff3 | Process | gff3 split feature | Split features in gzipped GFF3 format |
| nf-core/gatk4/indexfeaturefile | Process | feature gatk4 index indexfeaturefile | Creates an index for a feature file, e.g. VCF or BED file. |