Nextflow Modules
Showing module(s) with keyword "gatk"
| Module | Keywords | Description |
|---|---|---|
| nf-core/gatk4/addorreplacereadgroups | add replace read-group picard gatk | Assigns all the reads in a file to a single new read-group |
| nf-core/gatk4/concordance | concordance gatk4 gatk genomics variant calling genotyping vcf comparison | Evaluate concordance of an input VCF against a validated truth VCF |
| nf-core/gatk4/germlinecnvcaller | gatk germline contig ploidy germlinecnvcaller | Calls copy-number variants in germline samples given their counts and the output of DetermineGermlineContigPloidy. |