Nextflow Modules
Showing module(s) with keyword "quantification"
| Module | Keywords | Description |
|---|---|---|
| nf-core/diann | proteomics mass spectrometry DIA spectral library quantification | Generic DIA-NN module for running any DIA-NN operation including in-silico library generation, preliminary analysis, empirical library assembly, individual analysis, and final quantification |
| nf-core/mcquant | quantification image_analysis mcmicro highly_multiplexed_imaging | Mcquant extracts single-cell data given a multi-channel image and a segmentation mask. |
| nf-core/rsem/calculateexpression | rsem expression quantification | Calculate expression with RSEM |
| nf-core/sentieon/rsemcalculateexpression | rsem expression quantification sentieon | Calculate expression with RSEM |
| nf-core/simpleaf/quant | quantification gene expression SimpleAF | simpleaf is a program to simplify and customize the running and configuration of single-cell processing with alevin-fry. |
| nf-core/slamdunk/all | slamseq rna-seq mapping snp quantification | Complete SLAMseq analysis pipeline including read mapping, filtering, SNP calling, and quantification |
| nf-core/stringtie/stringtie | transcript assembly quantification gtf | Transcript assembly and quantification for RNA-Se |