Nextflow Modules
Showing module(s) with keyword "spaceranger"
| Module | Keywords | Description |
|---|---|---|
| nf-core/spaceranger/count | align count spatial spaceranger imaging | Module to use the 10x Space Ranger pipeline to process 10x spatial transcriptomics data |
| nf-core/spaceranger/mkgtf | reference mkref index spaceranger | Module to build a filtered GTF needed by the 10x Genomics Space Ranger tool. Uses the spaceranger mkgtf command. |
| nf-core/spaceranger/mkref | reference mkref index spaceranger | Module to build the reference needed by the 10x Genomics Space Ranger tool. Uses the spaceranger mkref command. |