Nextflow Modules
Showing module(s) with keyword "plasmid"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/dnaapler/all | Process | reorientation genome assembly chromosome plasmid phage dnaA fasta gfa | Reorients complete bacterial chromosomes, plasmids and phages to start at a conserved gene |
| nf-core/genomad/download | Process | metagenomics genomad database download phage virus plasmid | Download geNomad databases and related files |
| nf-core/genomad/endtoend | Process | metagenomics genomad database download phage virus plasmid | Identify mobile genetic elements present in genomic assemblies |
| nf-core/mobsuite/cluster | Process | bacteria plasmid cluster database genomics | Build a new plasmid MOB-cluster database, or assign new plasmids to the clusters of an existing one |
| nf-core/mobsuite/recon | Process | bacteria plasmid cluster | A tool to reconstruct plasmids in bacterial assemblies |
| nf-core/mobsuite/typer | Process | bacteria plasmid typing genomics | Bacterial plasmid typing and mobility prediction |
| nf-core/pcne | Process | plasmid copy number genomics alignment coverage | Estimates plasmid copy number from assembled genome |
| nf-core/plasmidfinder | Process | fasta fastq plasmid | Identify plasmids in bacterial sequences and assemblies |
| nf-core/plasmidid | Process | assembly plasmid bacterial | assembles bacterial plasmids |
| nf-core/staramr/search | Process | amr plasmid mlst genomics | Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases. |