Nextflow Modules
Showing module(s) with keyword "ploidy"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bcftools/pluginfixploidy | Process | fixploidy bcftools ploidy vcf | The fixploidy plugin fixes ploidy in genotype fields according to specified ploidy rules, sample sex assignments, or a forced ploidy value. For example, haploid genotypes can be converted to diploid genotypes. |
| nf-core/cnvkit/purity | Process | cnvkit purity ploidy cns genomics | estimates tumor purity and ploidy from a .cnr/.cns pair, using the same grid-search likelihood model as the somatic HMM methods. |
| nf-core/merquryfk/ploidyplot | Process | kmer smudgeplot ploidy | An improved version of Smudgeplot using FastK |
| nf-core/smudgeplot/hetmers | Process | Smudgeplot reference-free kmer ploidy genomics | Inference of ploidy and heterozygosity structure using whole genome sequencing data using FASTK databases |