Nextflow Modules
Showing module(s) with keyword "UMIs"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/fgbio/callmolecularconsensusreads | Process | UMIs consensus sequence bam | Calls consensus sequences from reads with the same unique molecular tag. |
| nf-core/fgbio/collectduplexseqmetrics | Process | UMIs QC bam duplex | Collects a suite of metrics to QC duplex sequencing data. |
| nf-core/fgumi/clip | Process | clip bam overlapping UMIs | Clip overlapping reads in a BAM file with fgumi |
| nf-core/fgumi/codec | Process | UMIs consensus codec bam duplex | Call CODEC consensus reads from a UMI-grouped BAM with fgumi |
| nf-core/fgumi/correct | Process | UMIs correction bam | Correct UMIs in a BAM file to a fixed set of known UMIs with fgumi |
| nf-core/fgumi/dedup | Process | UMIs deduplication duplicates bam | Mark or remove PCR duplicates using UMI information with fgumi |
| nf-core/fgumi/downsample | Process | UMIs downsample bam subsample | Downsample a BAM by UMI family using streaming with fgumi |
| nf-core/fgumi/duplexmetrics | Process | UMIs QC bam duplex metrics | Collects a suite of metrics to QC duplex sequencing data |
| nf-core/fgumi/fastq | Process | bam fastq convert UMIs | Convert a BAM file to interleaved FASTQ format with fgumi |
| nf-core/fgumi/simplexmetrics | Process | UMIs QC bam simplex metrics | Collects a suite of metrics to QC simplex (single-strand) UMI sequencing data |
| nf-core/fgumi/zipper | Process | UMIs zipper bam alignment merge | Zip an unmapped UMI BAM together with its aligned BAM using fgumi |