Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

5 pipeline(s) matching "denovo".

Pipeline	Keywords	Description
nf-core/bacass 2.6.1	assembly bacterial-genomes denovo denovo-assembly +4	Simple bacterial assembly and annotation pipeline
nf-core/denovohybrid 0.0.0-9299621	assembly denovo denovo-assembly genome-assembly +4	UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
nf-core/denovotranscript 1.2.1	denovo-assembly rna-seq transcriptome	A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq
nf-core/metatdenovo 2.0.0	eukaryotes metagenomics metatranscriptomics prokaryotes +1	Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
nf-core/neutronstar 1.0.0	10x-genomics 10xgenomics denovo-assembly genome-assembly +2	De novo assembly pipeline for 10X linked-reads using Supernova