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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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4 pipeline(s) matching "denovo-assembly".

Pipeline Keywords Description
nf-core/bacass
2.6.1
assembly bacterial-genomes denovo denovo-assembly +4 Simple bacterial assembly and annotation pipeline
nf-core/denovohybrid
0.0.0-9299621
assembly denovo denovo-assembly genome-assembly +4 UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
nf-core/denovotranscript
1.2.1
denovo-assembly rna-seq transcriptome A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq
nf-core/neutronstar
1.0.0
10x-genomics 10xgenomics denovo-assembly genome-assembly +2 De novo assembly pipeline for 10X linked-reads using Supernova