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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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3 pipeline(s) matching "epigenome".

Pipeline Keywords Description
nf-core/epigenomesegmentation
0.0.0-09de6dc
epigenome multi-omics-integration segmentation An nf-core pipeline for epigenome segmentation using EpiSegMix/Meth — a hidden Markov model with flexible read count distributions and state duration modeling for histone, open chromatin, and methylation signals.
nf-core/methylseq
4.2.0
bisulfite-sequencing dna-methylation em-seq epigenome +6 Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair
nf-core/sammyseq
0.0.0-023aff4
3d-genome chromatin dna epigenetics +6 Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.