Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

6 pipeline(s) matching "segmentation".

Pipeline	Keywords	Description
nf-core/epigenomesegmentation 0.0.0-09de6dc	epigenome multi-omics-integration segmentation	An nf-core pipeline for epigenome segmentation using EpiSegMix/Meth — a hidden Markov model with flexible read count distributions and state duration modeling for histone, open chromatin, and methylation signals.
nf-core/imcyto 1.0.0	cytometry image-analysis image-processing image-segmentation	Image Mass Cytometry analysis pipeline
nf-core/lsmquant 1.0.3	3dunet image-analysis image-processing light-sheet-microcopy +2	A pipeline for processing and analysis of light-sheet microscopy images.
nf-core/mcmicro 2.0.0	bioformats image-analysis image-processing microscopy +8	An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
nf-core/molkart 1.2.0	fish image-processing imaging molecularcartography +4	A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
nf-core/sopa 1.0.1	segmentation spatial-omics spatial-proteomics spatial-transcriptomics +1	Nextflow version of Sopa - spatial omics pipeline and analysis