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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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6 pipeline(s) matching "image-processing".

Pipeline Keywords Description
nf-core/imcyto
1.0.0
cytometry image-analysis image-processing image-segmentation Image Mass Cytometry analysis pipeline
nf-core/lsmquant
1.0.3
3dunet image-analysis image-processing light-sheet-microcopy +2 A pipeline for processing and analysis of light-sheet microscopy images.
nf-core/mcmicro
2.0.0
bioformats image-analysis image-processing microscopy +8 An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
nf-core/molkart
1.2.0
fish image-processing imaging molecularcartography +4 A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
nf-core/spatialaxe
1.0.1
10x-genomics atera image-processing spatial +4 A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data
nf-core/spatialvi
0.0.0-17d6cb0
10x-genomics 10xgenomics image-processing microscopy +7 Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.