Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

4 pipeline(s) matching "10x-genomics".

Pipeline	Keywords	Description
nf-core/neutronstar 1.0.0	10x-genomics 10xgenomics denovo-assembly genome-assembly +2	De novo assembly pipeline for 10X linked-reads using Supernova
nf-core/scrnaseq 4.2.0	10x-genomics 10xgenomics alevin bustools +5	Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
nf-core/spatialaxe 1.0.1	10x-genomics atera image-processing spatial +4	A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data
nf-core/spatialvi 0.0.0-17d6cb0	10x-genomics 10xgenomics image-processing microscopy +7	Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.