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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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2 pipeline(s) matching "microscopy".

Pipeline Keywords Description
nf-core/mcmicro
2.0.0
bioformats image-analysis image-processing microscopy +8 An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
nf-core/spatialvi
0.0.0-17d6cb0
10x-genomics 10xgenomics image-processing microscopy +7 Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.