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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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4 pipeline(s) matching "10xgenomics".

Pipeline Keywords Description
nf-core/neutronstar
1.0.0
10x-genomics 10xgenomics denovo-assembly genome-assembly +2 De novo assembly pipeline for 10X linked-reads using Supernova
nf-core/scnanoseq
1.3.0
10xgenomics long-read-sequencing nanopore rna-seq +3 Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
nf-core/scrnaseq
4.2.0
10x-genomics 10xgenomics alevin bustools +5 Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
nf-core/spatialvi
0.0.0-17d6cb0
10x-genomics 10xgenomics image-processing microscopy +7 Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.