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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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3 pipeline(s) matching "transcriptome".

Pipeline Keywords Description
nf-core/denovotranscript
1.2.1
 denovo-assembly rna-seq transcriptome A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq
nf-core/hicar
1.0.0
 atac atac-seq hic hicar +2 Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
nf-core/lncpipe
0.0.0-ac1ab61
 differential-expression lncrna long-non-coding non-coding +3 UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
Nextflow Registry v0.28.0_c73a300 - 12 Oct 2026 09:32:30 (UTC)