nf-core/assemblyscan @ 0.0.0-3fc6d40
Summary
Assembly summary statistics in JSON format
Get started
Add the following snippet to your workflow script to include this module.
include { ASSEMBLYSCAN } from 'nf-core/assemblyscan'
License
MIT License
Process
Name
|
ASSEMBLYSCAN |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
assembly
file
|
FASTA file for a given assembly *.fasta
|
Output
2 channels
#1
report
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{json,tsv}
file
|
Assembly statistics in tsv or JSON format *.{json,tsv}
|
#2
versions_assemblyscan
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
assemblyscan
string
|
The tool name |
assembly-scan --version 2>&1 | sed 's/^.*assembly-scan //; s/Using.*\$//'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| assemblyscan | Assembly summary statistics in JSON format | https://github.com/rpetit3/assembly-scan |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:02:06 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fassemblyscan/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/assemblyscan/blobs/sha256:5d7da106a8c6a80d6144d5dd2754231357e6de32793f4ce48ad6ad2191ed73a0 |
| Size | 2.4 KB |
| Checksum | sha256:5d7da106a8c6a80d6144d5dd2754231357e6de32793f4ce48ad6ad2191ed73a0 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:54 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:02:06 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:29 (UTC) | 4 | 2.4 KB |