nf-core/bismark/report @ 0.0.0-7f68141
Summary
Collects bismark alignment reports
Get started
Add the following snippet to your workflow script to include this module.
include { BISMARK_REPORT } from 'nf-core/bismark/report'
License
MIT License
Process
Name
|
BISMARK_REPORT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
align_report
file
|
Bismark alignment reports *{report.txt}
|
dedup_report
file
|
Bismark deduplication reports *.{deduplication_report.txt}
|
splitting_report
file
|
Bismark splitting reports *{splitting_report.txt}
|
mbias
file
|
Text file containing methylation bias information *.{txt}
|
Output
2 channels
#1
report
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*report.{html,txt}
file
|
Bismark reports *.{html,txt}
|
#2
versions_bismark
tuple
${task.process}
string
|
The name of the process |
|---|---|
bismark
string
|
The name of the tool |
bismark -v 2>&1 | sed -n 's/^.*Bismark Version: v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bismark | Bismark is a tool to map bisulfite treated sequencing reads and perform methylation calling in a quick and easy-to-use fashion. | https://github.com/FelixKrueger/Bismark |
| Version | 0.0.0-7f68141 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 16 Apr 2026 15:00:25 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbismark%2Freport/0.0.0-7f68141/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bismark/report/blobs/sha256:c37e42106922429220fc8e13eebb2ea3b8e9e99945169cfe6962b6c1e94af3c4 |
| Size | 2.7 KB |
| Checksum | sha256:c37e42106922429220fc8e13eebb2ea3b8e9e99945169cfe6962b6c1e94af3c4 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:07:27 (UTC) | 3 | 2.7 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:00:25 (UTC) | 3 | 2.7 KB | |
| 0.0.0-22e46af | 15 Apr 2026 15:00:16 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:48:14 (UTC) | 3 | 2.8 KB |