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nf-core/bismark/align
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bismark
3-letter genome
map
methylation
5mC
methylseq
bisulphite
bisulfite
bam
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Performs alignment of BS-Seq reads using bismark
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nf-core/bismark/coverage2cytosine
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bismark
consensus
map
methylation
5mC
methylseq
bisulphite
bisulfite
bam
bedGraph
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Relates methylation calls back to genomic cytosine contexts.
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nf-core/bismark/deduplicate
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bismark
3-letter genome
map
methylation
5mC
methylseq
bisulphite
bisulfite
bam
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Removes alignments to the same position in the genome
from the Bismark mapping output.
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nf-core/bismark/genomepreparation
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bismark
3-letter genome
index
methylation
5mC
methylseq
bisulphite
bisulfite
fasta
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Converts a specified reference genome into two different bisulfite
converted versions and indexes them for alignments.
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nf-core/bismark/methylationextractor
|
bismark
consensus
map
methylation
5mC
methylseq
bisulphite
bisulfite
bam
bedGraph
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Extracts methylation information for individual cytosines from alignments.
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nf-core/bismark/report
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bismark
qc
methylation
5mC
methylseq
bisulphite
bisulfite
report
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Collects bismark alignment reports
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nf-core/bismark/summary
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bismark
qc
methylation
5mC
methylseq
bisulphite
bisulfite
report
summary
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Uses Bismark report files of several samples in a run folder to generate a graphical summary HTML report.
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