Nextflow Modules
Showing module(s) with keyword "report"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| cellgeni/multiqc | Process | multiqc qc report custom content | Aggregates tool outputs and MultiQC custom content (*_mqc.* files) into a single HTML report, with a fixed output layout (multiqc_report.html and multiqc_data/) whatever the report title. |
| nf-core/bismark/report | Process | bismark qc methylation 5mC methylseq bisulphite bisulfite report | Collects bismark alignment reports |
| nf-core/bismark/summary | Process | bismark qc methylation 5mC methylseq bisulphite bisulfite report summary | Uses Bismark report files of several samples in a run folder to generate a graphical summary HTML report. |
| nf-core/centrifuge/kreport | Process | classify metagenomics fastq db report kraken | Creates Kraken-style reports from centrifuge out files |
| nf-core/ganon/report | Process | ganon metagenomics profiling taxonomy k-mer classification report | Generate a ganon report file from the output of ganon classify |
| nf-core/ganon/table | Process | ganon metagenomics profiling taxonomy k-mer classification report table | Generate a multi-sample report file from the output of ganon report runs |
| nf-core/happy/report | Process | happy benchmark report html variant-calling | Generate standalone HTML benchmarking reports from GA4GH / hap.py variant-calling metrics CSVs |
| nf-core/pharmcat/reporter | Process | pharmcat report PGx | The Reporter module is responsible for generating a report with genotype-specific expert-reviewed drug prescribing recommendations for clinical decision support. |
| nf-core/wipertools/reportgather | Process | report merge union | A tool of the wipertools suite that merges wiping reports generated by wipertools_fastqwiper |
| seqera-services/multiqc | Process | coverage benchmark report | Aggregate supported report files into a MultiQC report. |