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nf-core/bismark/align
|
bismark
3-letter genome
map
methylation
5mC
methylseq
bisulphite
bisulfite
bam
|
Performs alignment of BS-Seq reads using bismark
|
|
nf-core/bismark/coverage2cytosine
|
bismark
consensus
map
methylation
5mC
methylseq
bisulphite
bisulfite
bam
bedGraph
|
Relates methylation calls back to genomic cytosine contexts.
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|
nf-core/bismark/deduplicate
|
bismark
3-letter genome
map
methylation
5mC
methylseq
bisulphite
bisulfite
bam
|
Removes alignments to the same position in the genome
from the Bismark mapping output.
|
|
nf-core/bismark/genomepreparation
|
bismark
3-letter genome
index
methylation
5mC
methylseq
bisulphite
bisulfite
fasta
|
Converts a specified reference genome into two different bisulfite
converted versions and indexes them for alignments.
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|
nf-core/bismark/methylationextractor
|
bismark
consensus
map
methylation
5mC
methylseq
bisulphite
bisulfite
bam
bedGraph
|
Extracts methylation information for individual cytosines from alignments.
|
|
nf-core/bismark/report
|
bismark
qc
methylation
5mC
methylseq
bisulphite
bisulfite
report
|
Collects bismark alignment reports
|
|
nf-core/bismark/summary
|
bismark
qc
methylation
5mC
methylseq
bisulphite
bisulfite
report
summary
|
Uses Bismark report files of several samples in a run folder to generate a graphical summary HTML report.
|
|
nf-core/bwameth/align
|
bwameth
alignment
3-letter genome
map
methylation
5mC
methylseq
bisulphite
bisulfite
fastq
bam
|
Performs alignment of BS-Seq reads using bwameth
|
|
nf-core/methyldackel/extract
|
methylation
5mC
methylseq
bisulphite
bisulfite
consensus
bedGraph
bam
cram
|
Extracts per-base methylation metrics from alignments
|
|
nf-core/methyldackel/mbias
|
methylation
5mC
methylseq
bisulphite
bisulfite
methylation bias
mbias
qc
bam
cram
|
Generates methylation bias plots from alignments
|