nf-core/bwa/aln @ 0.0.0-0c7146d
Summary
Find SA coordinates of the input reads for bwa short-read mapping
Get started
Add the following snippet to your workflow script to include this module.
include { BWA_ALN } from 'nf-core/bwa/aln'
License
MIT License
Process
Name
|
BWA_ALN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively. |
#2
tuple
meta2
map
|
Groovy Map containing reference information. e.g. [ id:'test', single_end:false ] |
|---|---|
index
file
|
BWA genome index files Directory containing BWA index *.{amb,ann,bwt,pac,sa}
|
Output
2 channels
#1
sai
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sai
file
|
Single or paired SA coordinate files *.sai
|
#2
versions_bwa
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bwa
string
|
The tool name |
bwa 2>&1 | sed -n "s/^Version: //p"
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bwa | BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome. | http://bio-bwa.sourceforge.net/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:49:46 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbwa%2Faln/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bwa/aln/blobs/sha256:d56e551893765f6f2503fee6c5a967320ceefd0a0784bb6de4554821b6131316 |
| Size | 2.9 KB |
| Checksum | sha256:d56e551893765f6f2503fee6c5a967320ceefd0a0784bb6de4554821b6131316 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:03 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:49:46 (UTC) | 4 | 2.9 KB |