Nextflow Modules
Showing module(s) with keyword "bwa"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bwa/aln | bwa aln short-read align reference fasta map fastq | Find SA coordinates of the input reads for bwa short-read mapping |
| nf-core/bwa/mem | mem bwa alignment map fastq bam sam | Performs fastq alignment to a fasta reference using BWA |
| nf-core/bwamem2/mem | mem bwa alignment map fastq bam sam | Performs fastq alignment to a fasta reference using BWA |
| nf-core/bwameme/mem | mem bwa bwamem2 bwameme alignment map fastq bam sam cram | Performs fastq alignment to a fasta reference using BWA-MEME |
| nf-core/bwa/sampe | bwa aln short-read align reference fasta map sam bam | Convert paired-end bwa SA coordinate files to SAM format |
| nf-core/bwa/samse | bwa aln short-read align reference fasta map sam bam | Convert bwa SA coordinate file to SAM format |
| nf-core/circularmapper/circulargenerator | bwa circular mapping genomics | A method to improve mappings on circular genomes, using the BWA mapper. |
| nf-core/circularmapper/realignsamfile | realign circular map reference fasta bam short-read bwa | Realign reads mapped with BWA to elongated reference genome |
| nf-core/sentieon/bwamem | mem bwa alignment map fastq bam sentieon | Performs fastq alignment to a fasta reference using Sentieon's BWA MEM |