Nextflow Modules
Showing module(s) with keyword "short-read"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bwa/aln | Process | bwa aln short-read align reference fasta map fastq | Find SA coordinates of the input reads for bwa short-read mapping |
| nf-core/bwa/sampe | Process | bwa aln short-read align reference fasta map sam bam | Convert paired-end bwa SA coordinate files to SAM format |
| nf-core/bwa/samse | Process | bwa aln short-read align reference fasta map sam bam | Convert bwa SA coordinate file to SAM format |
| nf-core/circularmapper/realignsamfile | Process | realign circular map reference fasta bam short-read bwa | Realign reads mapped with BWA to elongated reference genome |
| nf-core/mapad/map | Process | mapad ancient dna adna damage deamination miscoding lesions c to t palaeogenomics archaeogenomics palaeogenetics archaeogenetics short-read align aligner alignment map mapper mapping reference fasta fastq bam cram | Map short-reads to an indexed reference genome |
| nf-core/minia | Process | assembler short-read de Bruijn | Minia is a short-read assembler based on a de Bruijn graph |