nf-core/bwameth/align @ 0.0.0-3fc6d40
Summary
Performs alignment of BS-Seq reads using bwameth
Get started
Add the following snippet to your workflow script to include this module.
include { BWAMETH_ALIGN } from 'nf-core/bwameth/align'
License
MIT License
Name
|
BWAMETH_ALIGN |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively. |
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input genome fasta file |
meta3
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
index
directory
|
Directory containing bwameth genome index |
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
Output BAM file containing read alignments *.{bam}
|
versions_bwameth
tuple
${task.process}
string
|
The name of the process |
|---|---|
bwameth
string
|
The name of the tool |
bwameth.py --version | cut -f2 -d ' '
eval
|
The expression to obtain the version of the tool |
versions_samtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
samtools
string
|
The name of the tool |
samtools version | sed '1!d;s/.* //'
eval
|
The expression to obtain the version of samtools |
| Tool | Description | Homepage |
|---|---|---|
| bwameth | Fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome. | https://github.com/brentp/bwa-meth |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:05:02 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbwameth%2Falign/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bwameth/align/blobs/sha256:a2bde4a6c2323de2f5737dbbd0bcf7048a8d55ed95b299320540c9720c5c9374 |
| Size | 3.0 KB |
| Checksum | sha256:a2bde4a6c2323de2f5737dbbd0bcf7048a8d55ed95b299320540c9720c5c9374 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:16 (UTC) | 4 | 3.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:05:02 (UTC) | 3 | 3.0 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:00:35 (UTC) | 4 | 3.0 KB | |
| 0.0.0-22e46af |