nf-core/checkm2/predict @ 0.0.0-0c7146d
Summary
CheckM2 bin quality prediction
Get started
Add the following snippet to your workflow script to include this module.
include { CHECKM2_PREDICT } from 'nf-core/checkm2/predict'
License
MIT License
Process
Name
|
CHECKM2_PREDICT |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
One or multiple FASTA files of each bin *.{fasta,fna,fa}
|
#2
tuple
dbmeta
map
|
Groovy Map containing database information e.g. |
|---|---|
db
file
|
CheckM2 database |
Output
3 channels
#1
checkm2_tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}_checkm2_report.tsv
file
|
CheckM2 summary completeness statistics table *.tsv
|
#2
checkm2_output
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}
directory
|
CheckM2 output directory ${prefix}/
|
#3
versions_checkm2_predict
tuple
${task.process}
string
|
The name of the process |
|---|---|
checkm2
string
|
The name of the tool |
checkm2 --version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| checkm2 | CheckM2 - Rapid assessment of genome bin quality using machine learning | https://github.com/chklovski/CheckM2 |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:51:28 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcheckm2%2Fpredict/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/checkm2/predict/blobs/sha256:8406c8cfb9451008bfa89f48e3c423c1bb0c5afc4a237b8a440f55c2a93ec3ff |
| Size | 2.7 KB |
| Checksum | sha256:8406c8cfb9451008bfa89f48e3c423c1bb0c5afc4a237b8a440f55c2a93ec3ff |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:59 (UTC) | 4 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:51:28 (UTC) | 3 | 2.7 KB |