Nextflow Modules
Showing module(s) with keyword "mag"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/binette | Process | binning refinement genomics metagenomics mag | A fast and accurate binning refinement tool to construct high quality MAGs from the output of multiple binning tools. |
| nf-core/checkm2/databasedownload | Process | checkm mag metagenome quality completeness contamination bins | CheckM2 database download |
| nf-core/checkm2/predict | Process | checkm mag metagenome quality completeness contamination bins | CheckM2 bin quality prediction |
| nf-core/checkm/lineagewf | Process | checkm mag metagenome quality isolates microbes single cells completeness contamination bins genome bins | CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. |
| nf-core/checkm/qa | Process | checkm mag metagenome quality isolates microbes single cells completeness contamination bins genome bins qa quality assurnce | CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. |
| nf-core/checkv/downloaddatabase | Process | checkv checkm mag metagenome quality isolates virus completeness contamination download database | Construct the database necessary for checkv's quality assessment |
| nf-core/checkv/endtoend | Process | checkv checkm mag metagenome quality isolates virus completeness contamination | Assess the quality of metagenome-assembled viral genomes. |
| nf-core/checkv/updatedatabase | Process | checkv checkm mag metagenome quality isolates virus completeness contamination | Construct the database necessary for checkv's quality assessment |
| nf-core/vamb/bin | Process | clustering binning metagenomics denovo assembly mag | Variational autoencoder for metagenomic binning |