Nextflow Modules
Showing module(s) with keyword "bins"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/checkm2/databasedownload | Process | checkm mag metagenome quality completeness contamination bins | CheckM2 database download |
| nf-core/checkm2/predict | Process | checkm mag metagenome quality completeness contamination bins | CheckM2 bin quality prediction |
| nf-core/checkm/lineagewf | Process | checkm mag metagenome quality isolates microbes single cells completeness contamination bins genome bins | CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. |
| nf-core/checkm/qa | Process | checkm mag metagenome quality isolates microbes single cells completeness contamination bins genome bins qa quality assurnce | CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. |
| nf-core/concoct/concoct | Process | contigs fragment mags binning concoct kmer nucleotide composition metagenomics bins | Unsupervised binning of metagenomic contigs by using nucleotide composition - kmer frequencies - and coverage data for multiple samples |
| nf-core/concoct/extractfastabins | Process | contigs fragment mags binning fasta cut cut up bins merge | Creates a FASTA file for each new cluster assigned by CONCOCT |
| nf-core/dastool/dastool | Process | binning das tool table de novo bins contigs assembly das_tool | DAS Tool binning step. |
| nf-core/dastool/fastatocontig2bin | Process | binning das tool table de novo bins contigs assembly das_tool | Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format |
| nf-core/dastool/scaffolds2bin | Process | binning das tool table de novo bins contigs assembly das_tool | Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format |
| nf-core/fasta_classify_catpack | Workflow | metagenomics taxonomy classification bins MAGs contigs CAT BAT | Taxonomic classification of binned MAGs and contigs using CAT/BAT (CAT_pack). |