Nextflow Registry | Nextflow Modules

Nextflow Modules

Showing module(s) with keyword "bins"

Module	Keywords	Description
nf-core/checkm2/databasedownload	checkm mag metagenome quality completeness contamination bins	CheckM2 database download
nf-core/checkm2/predict	checkm mag metagenome quality completeness contamination bins	CheckM2 bin quality prediction
nf-core/checkm/lineagewf	checkm mag metagenome quality isolates microbes single cells completeness contamination bins genome bins	CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.
nf-core/checkm/qa	checkm mag metagenome quality isolates microbes single cells completeness contamination bins genome bins qa quality assurnce	CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.
nf-core/concoct/concoct	contigs fragment mags binning concoct kmer nucleotide composition metagenomics bins	Unsupervised binning of metagenomic contigs by using nucleotide composition - kmer frequencies - and coverage data for multiple samples
nf-core/concoct/extractfastabins	contigs fragment mags binning fasta cut cut up bins merge	Creates a FASTA file for each new cluster assigned by CONCOCT
nf-core/dastool/dastool	binning das tool table de novo bins contigs assembly das_tool	DAS Tool binning step.
nf-core/dastool/fastatocontig2bin	binning das tool table de novo bins contigs assembly das_tool	Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format
nf-core/dastool/scaffolds2bin	binning das tool table de novo bins contigs assembly das_tool	Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format