nf-core/concoct/extractfastabins @ 0.0.0-6c4ed3a
Summary
Creates a FASTA file for each new cluster assigned by CONCOCT
Get started
Add the following snippet to your workflow script to include this module.
include { CONCOCT_EXTRACTFASTABINS } from 'nf-core/concoct/extractfastabins'
License
MIT License
Process
Name
|
CONCOCT_EXTRACTFASTABINS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
original_fasta
file
|
Original input FASTA file to CONOCT cut_up_fasta *.{fasta,fna,fa,fas}
|
csv
boolean
|
Output table of merge_cutup_clustering with new cluster assignments .csv
|
Output
2 channels
#1
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}/*.fa.gz
file
|
FASTA files containing CONCOCT predicted bin clusters, named numerically by CONCOCT cluster ID in a directory called *.fa.gz
|
#2
versions_concoct
tuple
${task.process}
string
|
The name of the process |
|---|---|
concoct
string
|
The name of the tool |
concoct --version 2>&1 | sed -n 's/concoct //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| concoct | Clustering cONtigs with COverage and ComposiTion | https://concoct.readthedocs.io/en/latest/index.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:11:07 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fconcoct%2Fextractfastabins/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/concoct/extractfastabins/blobs/sha256:8df2436baf807e25944734f63e957b54ed64cc78614594cf2ef784bc3ca098f3 |
| Size | 2.8 KB |
| Checksum | sha256:8df2436baf807e25944734f63e957b54ed64cc78614594cf2ef784bc3ca098f3 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:07 (UTC) | 3 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:07:37 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:53:44 (UTC) | 3 | 2.8 KB |