nf-core/kmcp/index @ 0.0.0-0c7146d
Summary
Construct KMCP database from k-mer files
Get started
Add the following snippet to your workflow script to include this module.
include { KMCP_INDEX } from 'nf-core/kmcp/index'
License
MIT License
Name
|
KMCP_INDEX |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
compute_dir
directory
|
Output directory generated by "kmcp compute" */
|
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
taxdmp
directory
|
List or directory containing NCBI-like taxdmp files (nodes.dmp, names.dmp, and optionally, merged.dmp, delnodes.dmp) */
|
meta3
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
seq2taxidmap
file
|
Kraken2 style sequence to taxid mapping file, with two columns: sequence ID and taxid (e.g. "accession1\t12345") *.map
|
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
A log of kmcp/index output *.log
|
kmcp
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}
directory
|
Output directory containing the database from k-mer files. */
|
versions_kmcp
tuple
${task.process}
string
|
The name of the process |
|---|---|
kmcp
string
|
The name of the tool |
kmcp version 2>&1 | sed 's/^.*kmcp v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| kmcp | Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping | https://github.com/shenwei356/kmcp |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:12:59 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkmcp%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/kmcp/index/blobs/sha256:6a8cd8baca7f55e9bf7e206acf6fc8dedb80e06205d43d322e1fa44639a6422b |
| Size | 2.6 KB |
| Checksum | sha256:6a8cd8baca7f55e9bf7e206acf6fc8dedb80e06205d43d322e1fa44639a6422b |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:59 (UTC) | 3 | 3.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:52 (UTC) | 3 | 2.6 KB | |
| 0.0.0-5d5b444 | 21 Apr 2026 15:01:04 (UTC) | 2 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:12:59 (UTC) | 3 | 2.6 KB |