nf-core/octopusv/plot @ 0.0.0-69017e7
Summary
Plot structural variant statistics using octopusv stat output
Get started
Add the following snippet to your workflow script to include this module.
include { OCTOPUSV_PLOT } from 'nf-core/octopusv/plot'
License
MIT License
Process
Name
|
OCTOPUSV_PLOT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
txt
file
|
OctopuSV stats text input *.txt
|
Output
7 channels
#1
sv_sizes_png
tuple
meta
map
|
Sample information |
|---|---|
${prefix}_sv_sizes.png
file
|
SV sizes plot (PNG) *_sv_sizes.png
|
#2
sv_sizes_svg
tuple
meta
map
|
Sample information |
|---|---|
${prefix}_sv_sizes.svg
file
|
SV sizes plot (SVG) *_sv_sizes.svg
|
#3
sv_types_png
tuple
meta
map
|
Sample information |
|---|---|
${prefix}_sv_types.png
file
|
SV types plot (PNG) *_sv_types.png
|
#4
sv_types_svg
tuple
meta
map
|
Sample information |
|---|---|
${prefix}_sv_types.svg
file
|
SV types plot (SVG) *_sv_types.svg
|
#5
versions_octopusv
tuple
${task.process}
string
|
The name of the process |
|---|---|
octopusv
string
|
The name of the tool |
python -c "import importlib.metadata as m; print(m.version('octopusv'))"
eval
|
The expression to obtain the version of the tool |
#6
chromosome_distribution_png
tuple
meta
map
|
Sample information |
|---|---|
${prefix}_chromosome_distribution.png
file
|
Chromosome distribution plot of structural variants (PNG) *_chromosome_distribution.png
|
#7
chromosome_distribution_svg
tuple
meta
map
|
Sample information |
|---|---|
${prefix}_chromosome_distribution.svg
file
|
Chromosome distribution plot of structural variants (SVG) *_chromosome_distribution.svg
|
| Tool | Description | Homepage |
|---|---|---|
| octopusv | End-to-end structural variant post-processing: standardize, merge, compare, and export SVs. | https://github.com/ylab-hi/OctopuSV |
| Version | 0.0.0-69017e7 |
|---|---|
| Commit ID | 69017e77fd733fb1d8db5add7ca34570223151b5 |
| Release Date | 23 May 2026 15:00:35 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Foctopusv%2Fplot/0.0.0-69017e7/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/octopusv/plot/blobs/sha256:7f977fcdcf72f8db842a6c599c289071bd76583ac18f746b536a7915e6db0ae5 |
| Size | 2.7 KB |
| Checksum | sha256:7f977fcdcf72f8db842a6c599c289071bd76583ac18f746b536a7915e6db0ae5 |
| Downloads | 0 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-69017e7 |