Nextflow Modules
Showing module(s) with keyword "ccs"
| Module | Keywords | Description |
|---|---|---|
| nf-core/hifiadapterfilt/hifiadapterfilt | pacbio hifi adapter filtering long reads ccs | Remove adapter sequences from PacBio HiFi (CCS) reads using BLAST-based detection. Produces filtered FASTQ output, filtering statistics, BLAST hits, and a list of blocked read IDs. |
| nf-core/isoseq/refine | isoseq refine ccs pacbio polyA_tail | Remove polyA tail and artificial concatemers |
| nf-core/lima | isoseq ccs primer pacbio barcode | lima - The PacBio Barcode Demultiplexer and Primer Remover |
| nf-core/pbccs | ccs pacbio isoseq subreads | Pacbio ccs - Generate Highly Accurate Single-Molecule Consensus Reads |