Nextflow Modules
Showing module(s) with keyword "cellranger"
| Module | Keywords | Description |
|---|---|---|
| cellgeni/cellranger/count | cellranger 10x single-cell RNA-seq count matrix | Runs Cell Ranger count on 10x single-cell RNA-seq FASTQs to align reads, generate feature-barcode matrices, and produce per-sample output directories. |
| nf-core/cellranger/mkvdjref | reference mkvdjref index immunoprofiling single-cell cellranger | Module to build the VDJ reference needed by the 10x Genomics Cell Ranger tool. Uses the cellranger mkvdjref command. |
| nf-core/cellranger/multi | align reference cellranger multiomics gene expression vdj antigen capture antibody capture crispr | Module to use Cell Ranger's pipelines to analyze sequencing data produced from various Chromium technologies, including Single Cell Gene Expression, Single Cell Immune Profiling, Feature Barcoding, and Cell Multiplexing. |
| nf-core/cellranger/vdj | align vdj reference immunoprofiling single-cell cellranger | Module to use Cell Ranger's pipelines analyze sequencing data produced from Chromium Single Cell Immune Profiling. |