Nextflow Modules
Showing module(s) with keyword "kinship"
| Module | Keywords | Description |
|---|---|---|
| nf-core/ldak/thinpredictors | ldak thinning predictors kinship | Run linkage disequilibrium (LD) pruning with linkage disequilibrium-adjusted kinship (LDAK) to create a thinned predictor list for weighted kinship workflows |
| nf-core/somalier/ancestry | relatedness QC bam cram vcf gvcf ancestry identity kinship informative sites family | Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs |
| nf-core/somalier/extract | relatedness QC bam cram vcf gvcf ancestry identity kinship informative sites family | Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs |
| nf-core/somalier/relate | relatedness QC bam cram vcf gvcf ancestry identity kinship informative sites family | Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs |