Nextflow Modules
Showing module(s) with keyword "mem"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bwa/mem | mem bwa alignment map fastq bam sam | Performs fastq alignment to a fasta reference using BWA |
| nf-core/bwamem2/mem | mem bwa alignment map fastq bam sam | Performs fastq alignment to a fasta reference using BWA |
| nf-core/bwameme/mem | mem bwa bwamem2 bwameme alignment map fastq bam sam cram | Performs fastq alignment to a fasta reference using BWA-MEME |
| nf-core/sentieon/bwamem | mem bwa alignment map fastq bam sentieon | Performs fastq alignment to a fasta reference using Sentieon's BWA MEM |
| nf-core/sentieon/dedup | mem dedup map bam cram sentieon | Runs the sentieon tool LocusCollector followed by Dedup. LocusCollector collects read information that is used by Dedup which in turn marks or removes duplicate reads. |