Nextflow Modules
Showing module(s) with keyword "mem"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bwafastalign/mem | Process | mem bwa bwafastalign alignment map fastq bam sam cram | Performs fastq alignment to a fasta reference using BWA-FastAlign. |
| nf-core/bwa/mem | Process | mem bwa alignment map fastq bam sam | Performs fastq alignment to a fasta reference using BWA |
| nf-core/bwamem2/mem | Process | mem bwa alignment map fastq bam sam | Performs fastq alignment to a fasta reference using BWA |
| nf-core/bwamem3/mem | Process | mem bwa alignment map fastq bam sam | Align fastq reads to a fasta reference using bwa-mem3 |
| nf-core/bwameme/mem | Process | mem bwa bwamem2 bwameme alignment map fastq bam sam cram | Performs fastq alignment to a fasta reference using BWA-MEME |
| nf-core/minibwa/map | Process | map mem alignment fastq bam sam | Align fastq reads to a fasta reference using minibwa |
| nf-core/sentieon/bwamem | Process | mem bwa alignment map fastq bam sentieon | Performs the alignment of fastq files to a fasta reference using Sentieon's BWA MEM |
| nf-core/sentieon/dedup | Process | mem dedup map bam cram sentieon | Runs the sentieon tool LocusCollector followed by Dedup. LocusCollector collects read information that is used by Dedup which, in turn, marks or removes duplicate reads. |