Nextflow Modules
Showing module(s) with keyword "pileup"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/alignoth | Process | genomics alignment visualization pileup plotting | Creating alignment plots from bam files |
| nf-core/bamtools/convert | Process | bamtools bamtools/convert bam convert bed fasta fastq json pileup sam yaml | BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files. |
| nf-core/biscuit/pileup | Process | bisulfite DNA methylation pileup variant calling WGBS scWGBS bam vcf | Computes cytosine methylation and callable SNV mutations, optionally in reference to a germline BAM to call somatic variants |
| nf-core/samtools/consensus | Process | consensus bam fastq fasta pileup | Produces a consensus FASTA/FASTQ/PILEUP |