Nextflow Modules
Showing module(s) with keyword "spectral library"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/diann | Process | proteomics mass spectrometry DIA spectral library quantification | Generic DIA-NN module for running any DIA-NN operation including in-silico library generation, preliminary analysis, empirical library assembly, individual analysis, and final quantification |
| nf-core/diann/insilicolibrarygeneration | Process | diann spectral library proteomics deep learning dia | Generate in silico predicted spectral library using DIA-NN deep learning predictor. This module uses DIA-NN software for data-independent acquisition (DIA) proteomics data processing. Output materials should include attribution: "Generated using DIA-NN". |
| nf-core/dia_proteomics_analysis | Workflow | diann proteomics dia quantification spectral library quantms-utils | Complete DIA-NN proteomics analysis pipeline including in-silico library generation, preliminary analysis, empirical library assembly, individual analysis, and final quantification. This subworkflow combines DIA-NN modules with quantms-utils for comprehensive data-independent acquisition (DIA) proteomics data processing. |
| nf-core/easypqp/convert | Process | proteomics spectral library dia pepxml idxml mzml | Convert peptide identifications (pepXML or idXML) and the matching spectra (mzML, mzXML or MGF) into EasyPQP PSM and peak pickle files for spectral library generation. |
| nf-core/easypqp/library | Process | proteomics spectral library dia openswath diann | Generate a spectral library (TSV) from EasyPQP PSM and peak pickle files. |