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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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4 pipeline(s) matching "alignment".

Pipeline Keywords Description
nf-core/nanoseq
3.1.0
alignment demultiplexing nanopore qc Nanopore demultiplexing, QC and alignment pipeline
nf-core/pacvar
1.1.0
alignment long-read pacbio puretarget +2 Longread PacBio sequencing processing for WGS and PureTarget
nf-core/pairgenomealign
3.0.4
comparative-genomics dot-plot genomics last +3 Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
nf-core/viralintegration
0.1.1
chimeric-alignment ctat viral-integration virus +1 Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.