Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

5 pipeline(s) matching "virus".

Pipeline	Keywords	Description
nf-core/metatdenovo 2.0.0	eukaryotes metagenomics metatranscriptomics prokaryotes +1	Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
nf-core/vipr 0.0.0-6eef3b3	genome-assembly metagenomics variant-calling viral +5	Assembly and intrahost / low-frequency variant calling for viral samples
nf-core/viralintegration 0.1.1	chimeric-alignment ctat viral-integration virus +1	Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.
nf-core/viralmetagenome 1.2.0	epidemiology fastq ngs viral-metagenomics +2	A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
nf-core/viralrecon 3.0.0	amplicon artic assembly covid-19 +11	Assembly and intrahost/low-frequency variant calling for viral samples