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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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7 pipeline(s) matching "long-read".

Pipeline Keywords Description
nf-core/detaxizer
1.3.0
de-identification decontamination edna fastq +10 A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
nf-core/mag
5.5.0
annotation assembly binning long-read-sequencing +4 Assembly and binning of metagenomes
nf-core/methylong
2.0.0
dna-methylation fiber-seq long-read ont +1 Extract methylation calls from long reads (ONT/ PacBio)
nf-core/pacvar
1.1.0
alignment long-read pacbio puretarget +2 Longread PacBio sequencing processing for WGS and PureTarget
nf-core/scnanoseq
1.3.0
10xgenomics long-read-sequencing nanopore rna-seq +3 Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
nf-core/taxprofiler
2.0.1
classification illumina long-reads metagenomics +7 Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
nf-core/viralrecon
3.0.0
amplicon artic assembly covid-19 +11 Assembly and intrahost/low-frequency variant calling for viral samples