Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

9 pipeline(s) matching "nanopore".

Pipeline	Keywords	Description
nf-core/bacass 2.6.1	assembly bacterial-genomes denovo denovo-assembly +4	Simple bacterial assembly and annotation pipeline
nf-core/denovohybrid 0.0.0-9299621	assembly denovo denovo-assembly genome-assembly +4	UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
nf-core/detaxizer 1.3.0	de-identification decontamination edna fastq +10	A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
nf-core/longraredisease 1.0.0	nanopore pacbio	Long read sequencing pipeline to identify variants in patients with neurodevelopmental disorders
nf-core/mag 5.5.0	annotation assembly binning long-read-sequencing +4	Assembly and binning of metagenomes
nf-core/nanoseq 3.1.0	alignment demultiplexing nanopore qc	Nanopore demultiplexing, QC and alignment pipeline
nf-core/scnanoseq 1.3.0	10xgenomics long-read-sequencing nanopore rna-seq +3	Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
nf-core/taxprofiler 2.0.1	classification illumina long-reads metagenomics +7	Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
nf-core/viralrecon 3.0.0	amplicon artic assembly covid-19 +11	Assembly and intrahost/low-frequency variant calling for viral samples