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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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3 pipeline(s) matching "spatial-transcriptomics".

Pipeline Keywords Description
nf-core/sopa
1.0.1
segmentation spatial-omics spatial-proteomics spatial-transcriptomics +1 Nextflow version of Sopa - spatial omics pipeline and analysis
nf-core/spatialaxe
1.0.1
10x-genomics atera image-processing spatial +4 A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data
nf-core/spatialvi
0.0.0-17d6cb0
10x-genomics 10xgenomics image-processing microscopy +7 Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.