nf-core/damageprofiler @ 0.0.0-3fc6d40
Summary
A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
Get started
Add the following snippet to your workflow script to include this module.
include { DAMAGEPROFILER } from 'nf-core/damageprofiler'
License
MIT License
Process
Name
|
DAMAGEPROFILER |
|---|
Input
4 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM/SAM file *.{bam,cram,sam}
|
fasta
file
|
OPTIONAL FASTA reference file *.{fasta,fna,fa}
|
|---|
fai
file
|
OPTIONAL FASTA index file from samtools faidx *.{fai}
|
|---|
specieslist
file
|
OPTIONAL text file with list of target reference headers *.{txt}
|
|---|
Output
2 channels
#1
results
tuple
meta
directory
|
DamageProfiler results directory */*
|
|---|---|
${prefix}
directory
|
DamageProfiler results directory */*
|
#2
versions_damageprofiler
tuple
${task.process}
string
|
The name of the process |
|---|---|
damageprofiler
string
|
The name of the tool |
damageprofiler -v | sed 's/^DamageProfiler v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| damageprofiler | A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage | https://github.com/Integrative-Transcriptomics/DamageProfiler |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:08:44 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdamageprofiler/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/damageprofiler/blobs/sha256:853ec1f4528c4b2905fe3a362f515d62840009bbf7e6237e71fd3140cef3389a |
| Size | 3.6 KB |
| Checksum | sha256:853ec1f4528c4b2905fe3a362f515d62840009bbf7e6237e71fd3140cef3389a |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:12:25 (UTC) | 3 | 3.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:44 (UTC) | 3 | 3.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:55:37 (UTC) | 3 | 3.5 KB |