Nextflow Modules
Showing module(s) with keyword "palaeogenetics"
| Module | Keywords | Description |
|---|---|---|
| nf-core/damageprofiler | damage deamination miscoding lesions C to T ancient DNA aDNA palaeogenomics archaeogenomics palaeogenetics archaeogenetics | A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage |
| nf-core/mapad/map | mapad ancient dna adna damage deamination miscoding lesions c to t palaeogenomics archaeogenomics palaeogenetics archaeogenetics short-read align aligner alignment map mapper mapping reference fasta fastq bam cram | Map short-reads to an indexed reference genome |
| nf-core/pydamage/analyze | ancient DNA aDNA de novo assembly filtering damage deamination miscoding lesions C to T palaeogenomics archaeogenomics palaeogenetics archaeogenetics | Damage parameter estimation for ancient DNA |
| nf-core/pydamage/filter | ancient DNA aDNA de novo assembly filtering damage deamination miscoding lesions C to T palaeogenomics archaeogenomics palaeogenetics archaeogenetics | Damage parameter estimation for ancient DNA |