Nextflow Registry | Nextflow Modules

Nextflow Modules

Showing module(s) with keyword "deamination"

Module	Keywords	Description
nf-core/authentict/deam2cont	authentict ancientDNA single-stranded deamination contamination damage	Use deamination patterns to estimate contamination in single-stranded libraries
nf-core/damageprofiler	damage deamination miscoding lesions C to T ancient DNA aDNA palaeogenomics archaeogenomics palaeogenetics archaeogenetics	A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
nf-core/mapad/map	mapad ancient dna adna damage deamination miscoding lesions c to t palaeogenomics archaeogenomics palaeogenetics archaeogenetics short-read align aligner alignment map mapper mapping reference fasta fastq bam cram	Map short-reads to an indexed reference genome
nf-core/pydamage/analyze	ancient DNA aDNA de novo assembly filtering damage deamination miscoding lesions C to T palaeogenomics archaeogenomics palaeogenetics archaeogenetics	Damage parameter estimation for ancient DNA
nf-core/pydamage/filter	ancient DNA aDNA de novo assembly filtering damage deamination miscoding lesions C to T palaeogenomics archaeogenomics palaeogenetics archaeogenetics	Damage parameter estimation for ancient DNA