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nf-core/authentict/deam2cont
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Process
|
authentict
ancientDNA
single-stranded
deamination
contamination
damage
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Use deamination patterns to estimate contamination in single-stranded libraries
|
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nf-core/damageprofiler
|
Process
|
damage
deamination
miscoding lesions
C to T
ancient DNA
aDNA
palaeogenomics
archaeogenomics
palaeogenetics
archaeogenetics
|
A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
|
|
nf-core/mapad/map
|
Process
|
mapad
ancient dna
adna
damage
deamination
miscoding lesions
c to t
palaeogenomics
archaeogenomics
palaeogenetics
archaeogenetics
short-read
align
aligner
alignment
map
mapper
mapping
reference
fasta
fastq
bam
cram
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Map short-reads to an indexed reference genome
|
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nf-core/pydamage/analyze
|
Process
|
ancient DNA
aDNA
de novo assembly
filtering
damage
deamination
miscoding lesions
C to T
palaeogenomics
archaeogenomics
palaeogenetics
archaeogenetics
|
Damage parameter estimation for ancient DNA
|
|
nf-core/pydamage/filter
|
Process
|
ancient DNA
aDNA
de novo assembly
filtering
damage
deamination
miscoding lesions
C to T
palaeogenomics
archaeogenomics
palaeogenetics
archaeogenetics
|
Damage parameter estimation for ancient DNA
|